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6 MIN LESSON · CHEMISTRY

Biomolecules in Chemistry: Carbohydrates, Proteins, Vitamins and Nucleic Acids

The chemistry of life: classification and structures of carbohydrates including glucose, sucrose and starch, amino acids and the structure of proteins, denaturation, enzymes, vitamins, and the structure of DNA and RNA.

Carbohydrates

Carbohydrates are optically active polyhydroxy aldehydes or ketones, or compounds that give these on hydrolysis. Many have the formula Cₓ(H₂O)ᵧ, which is why they were once called "hydrates of carbon".

Class

Hydrolysis gives

Examples

Monosaccharides

cannot be hydrolysed further

glucose, fructose, ribose

Oligosaccharides

2 to 10 monosaccharides

disaccharides: sucrose, maltose, lactose

Polysaccharides

many monosaccharides

starch, cellulose, glycogen

Monosaccharides with an aldehyde group are aldoses (glucose is an aldohexose); those with a ketone group are ketoses (fructose is a ketohexose).

Reducing sugars reduce Tollens' reagent and Fehling's solution: all monosaccharides and maltose and lactose. Sucrose is non-reducing, because both its reducing groups are used in the bond joining its two units.

Glucose

Glucose, C₆H₁₂O₆, is made commercially by hydrolysing starch with dilute acid.

Evidence for its open-chain structure:

  • With HI it gives n-hexane: the six carbons are in a straight chain.

  • With hydroxylamine it forms an oxime: a carbonyl group is present.

  • With bromine water it gives gluconic acid: the carbonyl is an aldehyde.

  • Acetylation gives a pentaacetate: there are five –OH groups.

  • Nitric acid oxidises it to saccharic acid: there is a primary alcohol (–CH₂OH) group.

Glucose is D-(+)-glucose. "D" refers to the configuration at the carbon farthest from the aldehyde (related to D-glyceraldehyde); "(+)" means it rotates plane-polarised light to the right.

Cyclic structure. The open-chain structure couldn't explain some facts: glucose doesn't give Schiff's test or form a bisulphite product, and its pentaacetate doesn't react with hydroxylamine. In fact, the –OH at C5 adds to the aldehyde group, forming a six-membered ring (a pyranose ring). Two forms result, α and β, which differ only at C1, called anomers.

Disaccharides and polysaccharides

Monosaccharide units join through a glycosidic linkage, an oxygen bridge formed with the loss of water.

Sugar

Made of

Notes

Sucrose

α-D-glucose + β-D-fructose

non-reducing; hydrolysis gives an equal mixture of glucose and fructose called invert sugar, because the rotation changes from dextro to laevo

Maltose

two α-D-glucose units (C1–C4)

reducing

Lactose (milk sugar)

β-D-galactose + β-D-glucose

reducing

Starch

α-glucose; amylose (unbranched, water-soluble, 15–20%) and amylopectin (branched, insoluble, 80–85%)

main stored food in plants

Cellulose

β-glucose, unbranched chains

main structural material of plant cell walls; humans can't digest it

Glycogen

α-glucose, highly branched

stored in animal liver and muscles (called "animal starch")

Amino acids and proteins

Amino acids contain an amino group and a carboxyl group. Those in proteins are α-amino acids: R–CH(NH₂)–COOH.

  • Essential amino acids can't be made by the body and must come from food (valine, leucine, lysine and others). Non-essential ones can be made in the body.

  • In solution, amino acids exist as zwitterions: H₃N⁺–CHR–COO⁻, with both positive and negative charges. So they behave like salts, with high melting points and water solubility, and are amphoteric.

  • All naturally occurring α-amino acids except glycine are optically active, with the L-configuration.

Peptide bond: the –CO–NH– amide link formed between the –COOH of one amino acid and the –NH₂ of the next, with the loss of water. Two amino acids form a dipeptide; many form a polypeptide. A polypeptide with more than about a hundred amino acids is generally a protein.

Fibrous proteins have parallel chains held by hydrogen and disulphide bonds; they are insoluble in water (keratin in hair, myosin in muscle). Globular proteins are folded into spheres and are water-soluble (insulin, albumins).

Levels of structure:

Level

What it describes

Primary

the sequence of amino acids. Changing even one amino acid can change the function (as in sickle-cell anaemia)

Secondary

regular folding: α-helix or β-pleated sheet, held by hydrogen bonds between –CO– and –NH– groups

Tertiary

overall folding of the chain, held by hydrogen bonds, disulphide links, van der Waals and electrostatic forces

Quaternary

arrangement of two or more polypeptide subunits

Denaturation. Heat or changes in pH disrupt the hydrogen bonds, the protein unfolds and loses its biological activity, while the primary structure stays intact. Boiling an egg coagulates the albumin; curdling milk is caused by lactic acid from bacteria.

Enzymes

Enzymes are biological catalysts, almost all of them proteins. They are highly specific, each catalysing a particular reaction. They work under mild conditions (body temperature and near-neutral pH) and lower the activation energy. Enzymes are named after the reaction or substrate, usually ending in -ase: maltase hydrolyses maltose.

Vitamins

Vitamins are organic compounds needed in small amounts in the diet for normal health.

Vitamin

Solubility

Deficiency disease

A

fat-soluble

night blindness, xerophthalmia

B₁ (thiamine)

water-soluble

beriberi

B₂ (riboflavin)

water-soluble

cheilosis (cracked lips)

B₆ (pyridoxine)

water-soluble

convulsions

B₁₂

water-soluble

pernicious anaemia

C (ascorbic acid)

water-soluble

scurvy (bleeding gums)

D

fat-soluble

rickets (children), osteomalacia (adults)

E

fat-soluble

increased fragility of red blood cells, muscle weakness

K

fat-soluble

increased blood clotting time

Fat-soluble vitamins (A, D, E, K) are stored in the liver and fatty tissue. Water-soluble vitamins (B group and C) are excreted in urine and must be supplied regularly. Vitamin B₁₂ is the exception: it is stored in the liver.

Nucleic acids

DNA (deoxyribonucleic acid) and RNA (ribonucleic acid) carry hereditary information. They are polymers of nucleotides; each nucleotide has a base, a pentose sugar and a phosphate. Nucleotides are joined by phosphodiester linkages between the sugar of one and the phosphate of the next.

DNA

RNA

Sugar

2-deoxyribose

ribose

Bases

A, G, C, T (thymine)

A, G, C, U (uracil)

Structure

double helix

usually single-stranded

Role

stores genetic information; replicates

protein synthesis (mRNA, tRNA, rRNA)

In the DNA double helix (Watson and Crick, 1953), the two strands are complementary: A pairs with T and G pairs with C, held by hydrogen bonds.

DNA fingerprinting, based on the unique sequence of bases in each individual, is used in forensics and to establish parentage.

Summary

  • Carbohydrates: monosaccharides, oligosaccharides, polysaccharides; sucrose is non-reducing.

  • Glucose is an aldohexose with a cyclic pyranose structure (α and β anomers).

  • Amino acids exist as zwitterions; peptide bonds join them; denaturation destroys secondary and tertiary structure.

  • Vitamins A, D, E, K are fat-soluble; B and C are water-soluble.

  • DNA has deoxyribose and thymine and is a double helix; RNA has ribose and uracil.

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